The main goal of our Cell Modeling Hackathon series is to catalyze new collaborations.    Several of these collaborations launched at the QCBNet Hackathons have resulted in publications:

• Berro J.   2018. “Essentially, all models are wrong, but some are useful”—a cross-disciplinary agenda for building useful models in cell biology and biophysics. Biophys. Rev.. 10 (6), 1637.  DOI: 10.1007/s12551-018-0478-4

• Daniel B. Cortes, Adriana Dawes, Jian Liu, Masoud Nickaeen, Wanda Strychalski, Amy Shaub Maddox 2018.   Unite to divide – how models and biological experimentation have come together to reveal mechanisms of cytokinesis. J. Cell Sci.. 131 pii: jcs203570.  DOI: 10.1242/jcs.203570

• Joshua Pan, Kaitlyn Johnson 2019. “Hacking” Our Way across Interdisciplinary Boundaries. Cell Systems. 8 361.  DOI: https://doi.org/10.1016/j.cels.2019.04.006

• Lian Zhu, Yogesh Goyal 2019. Art & Science. EMBO Reports. 20 e47061. DOI: https://doi.org/10.15252/embr.201847061

• Pan J, Meyers RM, Michel BC, Mashtalir N, Sizemore AE, Wells JN, Cassel SH, Vazquez F, Weir BA, Hahn WC, Marsh JA, Tsherniak A, Kadoch C 2018. Interrogation of Mammalian Protein Complex Structure, Function, and Membership Using Genome-Scale Fitness Screens. Cell Systems. 6 555-568.  DOI: 10.1016/j.cels.2018.04.011

• Ma, R, Hendel N, Marshall WF, Qin HM.  2020.  Speed and diffusion of kinesin-2 are competing limiting factors in flagellar length control model.   Biophys. J.  118, 2790-2800    

• Jones C, Gomez M, Muoio RM, Vidal A, McKnight RA, Brubaker ND, Ahmed W. 2021. Stochastic force dynamics of the model microswimmer : Active forces and energetics Phys. Rev. E. 103, 032403

• Vedula P, Kurosaka S, McTaggart B, Ni Q, Papoian G, Jiang Y, Dong DW, Kashina A.  2021.  Different translation dynamics of β-and γ-actin regulates cell migration  eLife 10, e68712

• Eldeen S, Muoio R, Blaisdell-Pijuan P, La N, Gomez M, Vidal A, Ahmed W.  2022.  Quantifying the non-equilibrium activity of an active colloid  Soft Matter  16, 7202-7209 

• Miller K, Strychalski W, Nickaeen M, Carlsson A, Haswell ES.  2022.  In vitro experiments and kinetic models of Arabidopsis pollen hydration mechanics show that MSL8 is not a simple tension-gated osmoregulator  Current Biology 32, 2921-2934

• Gong Y, Dale R, Fung HF, Amador GO, Smit ME, Bergmann DC.  2023.  A cell size threshold triggers commitment to stomatal fate in Arabidopsis Science Advances   9, DOI: 10.1126/sciadv.adf34

• Sun Y, Yu Z, Obara C, Mittal K, Lippincott-Schwartz J, Koslover E.  2022. Unraveling trajectories of diffusive particles on networks Phys. Rev. Research 4, 023182

• Lemiere J, Calderon-Real P, Holt LJ, Fai TG, Chang F.  2022.  Control of nuclear size by osmotic forces in Schizosaccharomyces pombe  eLife  11, e76075.